Dr. Yunhan Zhang from our team, under the guidance of Professor Liangbin Li's research team, proposed a temperature-cycling-guided self-assembly strategy to avoid kinetic traps in the self-assembly of DNA-functionalized gold nanoparticles and enable the formation of defect-free crystals. The self-assembly of DNA-functionalized gold nanoparticles (DNA-AuNPs) holds great potential for constructing ordered nanostructures. However, when interparticle interactions are excessively strong, the system can readily become trapped in long-lived disordered aggregate states, known as “kinetic traps,” leading to numerous crystal defects that severely compromise functionality. Conventional thermal annealing is often limited by free-energy barriers and therefore cannot completely eliminate these metastable defects. Developing an effective strategy that can guide the system out of kinetic traps and achieve defect-free assembly has thus become a key challenge in this field. The proposed strategy periodically alternates between high and low temperatures (Thigh/Tlow), thereby reversibly regulating hydrogen-bond interactions between DNA strands. During the high-temperature stage, thermal energy helps particles escape metastable and misbound states and enhances their ability to undergo local rearrangement; during the low-temperature stage, hydrogen bonds reform and defects are repaired, driving the system toward a more stable energetic state. By combining theoretical modeling, coarse-grained molecular dynamics simulations, and experimental validation, the team demonstrated that this strategy provides sustained and periodic energy input, exploits cooperative interparticle effects to perturb defective regions, and guides the system across free-energy barriers, ultimately enabling the efficient formation of defect-free body-centered cubic (BCC) crystals.

Figure 1. (a) Schematic free-energy landscape of temperature-cycling-guided self-assembly; (b) assembly yield as a function of time predicted by the theoretical model.
Simulation and experimental results showed that when the temperature of the high-temperature stage was set near the melting point of the system (e.g., Thigh ≈ 0.29–0.41) and maintained for an appropriate duration, nearly perfect single crystals could be obtained. In contrast, constant low temperatures and excessively high temperatures led to kinetic trapping and particle dispersion, respectively. Analysis of crystal orientation using the polyhedral template matching (PTM) method showed that temperature cycling effectively eliminated the coexistence of multiple crystallites and produced a single crystallographic orientation. Furthermore, in nucleotide-level simulations, the strategy successfully guided DNA-AuNPs from a disordered state into a defect-free BCC structure, further validating its effectiveness at the molecular scale.

Figure 2. Crystallization process of the DNA-AuNP system under fixed conditions of thigh = 1.2 × 105δt, Tlow = 0.1, and tlow = 3.0 × 104δt. Starting from a disordered initial state, the crystallization behaviors at (a) Thigh = 0.20 and (b) Thigh = 0.31 are shown. Particles are colored according to their structural types identified by PTM, with different colors representing different crystallographic orientations. Free and unclassified particles are shown in gray.
This work elucidates the nonequilibrium kinetic mechanism underlying temperature-cycling-driven self-assembly of DNA-AuNPs and overcomes the limitations of conventional thermal annealing in eliminating kinetic traps. The proposed periodic energy-injection strategy is applicable not only to DNA-functionalized nanoparticle systems but also, in principle, to other self-assembly systems hindered by kinetic traps. Its underlying physical principle—periodically modulating interparticle interactions through an external field to guide assembly—may be extended to systems such as block copolymer thin films. This approach provides a new strategy for constructing defect-free functional nanomaterials.
This work was supported by the National Natural Science Foundation of China (22503090), the Fundamental Research Funds for the Central Universities (WK2310000119), and the China Postdoctoral Science Foundation (2023M743377).
Zhang, Y.; Cao, R.; Sun, H.; Xu, T.; Li, L. Temperature-Cycling-Guided Self-Assembly of DNA-Functionalized Nanoparticles for Avoiding Kinetic Traps. Nano Letters 2026, 26(10), 3589–3595.
Paper Link: https://pubs.acs.org/doi/10.1021/acs.nanolett.6c00253